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Getting started

  • What xPlant is for
  • Organizing Your First Tissue Culture

Tissue culture concepts

  • Plants, explants, and stages
  • Media recipes and additives
  • Contamination tracking basics
  • Intro to Plant Tissue Culture
  • Tissue Culture Basics

Lab workflows

  • Record a transfer
  • Batch Tracker
  • Create and use SOPs
  • Comments and team context
  • Lab rooms
  • Managing tasks

Protocols

  • Protocols and SOPs — what's the difference?
  • Sterilization and aseptic technique
  • Media preparation protocol

Lab tools

  • QR labels and scanner

Developer tools

  • Developer API & JavaScript SDK

Account and support

  • Privacy and data controls
  • AI features and smart suggestions

Tissue culture concepts

Plants, explants, and stages

xPlant organizes tissue culture records into three connected concepts: Plants, Explants, and Stages. Understanding how they work together makes it easier to document cultures, track their development, and build connected laboratory histories.

Plants

A Plant represents the source plant from which tissue culture material originates in xPlant. It holds identifying information such as species, cultivar, photo, origin notes, and any tags or labels you apply. It can also carry its own Stage history (Mother Block, Production, Field, etc.) that reflects the status of the source Plant itself, not its in vitro Explants.

Plant records can remain in your library even after all related Explants have been discarded, so source information and history stay connected to the work derived from them.

Plant stage options

Mother BlockSource Plant maintained for repeated explant production.
PropagationActive vegetative multiplication — cuttings, divisions, or nodes.
ProductionScale-up phase producing batches for transfer or sale.
AcclimationTransitioning rooted material from controlled to ambient conditions.
Hardening OffPlant material transitioning toward greenhouse or outdoor growing conditions.
GreenhouseEstablished or maintained under greenhouse conditions.
FieldPlanted out in the ground or large containers.
Cold StorageHeld under cold-storage conditions for later use.
QuarantineIsolated for health monitoring or entry screening.
DiscardedSource Plant removed from active use or discarded.

Explants

An Explant represents an individual tissue culture tracked in xPlant for in vitro propagation. When a source Plant record exists, the Explant can remain linked to it while maintaining its own label, Stage and Transfer history, contamination records, observations, and media links.

When you establish multiple cultures from the same source Plant, create separate Explants for the cultures you want to track independently. Do not use vessel count alone to define Explants: an Explant is the tracked culture record, while a vessel is the physical container used during culture. This lets related cultures maintain independent histories — for example, one Explant may show contamination while another does not.

Explant stage options

PendingExplant created but not yet initiated.
Surface SterilizationRecords a surface sterilization step associated with explant preparation.
Explant InitiationTissue placed on media for the first time.
MultiplicationActive shoot or callus multiplication.
Shoot ElongationElongating shoots before rooting.
Root InductionApplying rooting stimulus.
RootingActive root formation on shoots.
AcclimatizationTransitioning rooted in vitro material toward ambient conditions.
Hardening OffFinal transition before outdoor or greenhouse placement.
Ready for TransferMaterial staged for the next destination.
QuarantineHeld for observation or screening.
DiscardedCulture removed from active tracking or intentionally discarded.

Stages

A Stage records a phase in the development or status of a Plant or Explant. Each Stage can capture:

  • Stage type (e.g. Multiplication, Rooting)
  • Status (Active, Completed, Failed, Archived)
  • Entry date and optional start / completion timestamps
  • Description and observation notes
  • Room or physical location
  • For Explant Stages, optional vessel count, plantlet estimate, and survival count

Stage entries form a chronological history. xPlant keeps a current Stage for the Plant or Explant while earlier Stage entries remain available for reviewing how the record changed over time.

The key distinction

Plant Stages track the status of the source Plant — is it in Production, Quarantine, or Discarded? Explant Stages track the development of an individual tissue culture — is the Explant at Explant Initiation, Multiplication, Rooting, or Acclimatization?

A source Plant can be active as a Mother Block while its Explants are simultaneously at Multiplication, Rooting, and Acclimatization. Each record answers a different question.

Related guides

First plant and explant workflowRecord a transferContamination tracking basicsMedia recipes and additives